BEAMish

Eppley Institute for Cancer Research

University of Nebraska Medical Center

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Introduction

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CommonTasks

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Index

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About

General	Getting Started	Common Tasks
Introduction Experimental Setup Order of processing steps Common Mistakes	Installing BEAM-ish BEAMISH environment variable beamish.ini file	Creating a New Project Opening an Existing Project Changing the Detector Image Processing Data Selecting a Profile Filtering Reflections Fitting Gaussians to Profiles Marking Symmetry Related Reflections Setting up Inter-BEAM-ish Process Communication Animating Reflection Profiles
BEAM-ish GUI	External Program Files	Shared Libraries
Menu Structure Main Window BEAM-ish Settings Dialog Box Project Settings Dialog Box Filter Settings Dialog Box Color Selection Dialog Box Statistics Window Fit Manager Animator	Mosflm Halfslice Peakstats	Qt Library Qwt Library Matlab Libraries LMPeakfit Library
Key Algorithms and Calculations	Project Directory Files	About
Levenburg-Marquardt DE Genetic Algorithm Average Filtering Mosaicity Correction Lorentz Correction Intensity Calculation Integrated Intensity Calculation Background Calculation Peak Searching Anisotropic Calculation	prj File scr File halfin File inp File cntr File MissingImageList.txt fit File RefPro.txt Files AnDatRef.txt Files tif Files mtz File profile.dat pred File dat2 File fwhm File	Author Information Reporting a bug Referencing Development Environment IPC Implementation